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Publications

BMC genomics. 2009-11-18; 10.539.
Complexity of genome evolution by segmental rearrangement in Brassica rapa revealed by sequence-level analysis
Trick M, Kwon SJ, Choi SR, Fraser F, Soumpourou E, Drou N, Wang Z, Lee SY, Yang TJ, Mun JH, Paterson AH, Town CD, Pires JC, Pyo Lim Y, Park BS, Bancroft I
PMID: 19922648
PLoS currents. 2009-11-03; 1.RRN1126.
The early diversification of influenza A/H1N1pdm
Nelson M, Spiro D, Wentworth D, Beck E, Fan J, Ghedin E, Halpin R, Bera J, Hine E, Proudfoot K, Stockwell T, Lin X, Griesemer S, Kumar S, Bose M, Viboud C, Holmes E, Henrickson K
PMID: 20029664
Proteomics. 2009-11-01; 9.22: 5029-45.
The Shigella dysenteriae serotype 1 proteome, profiled in the host intestinal environment, reveals major metabolic modifications and increased expression of invasive proteins
Pieper R, Zhang Q, Parmar PP, Huang ST, Clark DJ, Alami H, Donohue-Rolfe A, Fleischmann RD, Peterson SN, Tzipori S
PMID: 19813213
Nature biotechnology. 2009-11-01; 27.11: 998-9.
Targeted sequencing with microfluidics
Kirkness EF
PMID: 19898452
Journal of bacteriology. 2009-11-01; 191.22: 7144-5.
Complete genome sequence of Robiginitalea biformata HTCC2501
Oh HM, Giovannoni SJ, Lee K, Ferriera S, Johnson J, Cho JC
PMID: 19767438
Journal of computational biology : a journal of computational molecular cell biology. 2009-11-01; 16.11: 1517-28.
Alignment of phylogenetically unambiguous indels in Shewanella
McCrow JP
PMID: 19958081
Science (New York, N.Y.). 2009-10-09; 326.5950: 236-7.
Genomics. Genome project standards in a new era of sequencing
Chain PS, Grafham DV, Fulton RS, FitzGerald MG, Hostetler J, Muzny D, Ali J, Birren B, Bruce DC, Buhay C, Cole JR, Ding Y, Dugan S, Field D, Garrity GM, Gibbs R, Graves T, Han CS, Harrison SH, Highlander S, Hugenholtz P, Khouri HM, Kodira CD, Kolker E, Kyrpides NC, Lang D, Lapidus A, Malfatti SA, Markowitz V, Metha T, Nelson KE, Parkhill J, Pitluck S, Qin X, Read TD, Schmutz J, Sozhamannan S, Sterk P, Strausberg RL, Sutton G, Thomson NR, Tiedje JM, Weinstock G, Wollam A, Genomic Standards Consortium Human Microbiome Project Jumpstart Consortium, Detter JC
PMID: 19815760
Nature. 2009-10-08; 461.7265: 724-6.
An agenda for personalized medicine
Ng PC, Murray SS, Levy S, Venter JC
PMID: 19812653
BMC microbiology. 2009-10-07; 9.213.
Whole genome single nucleotide polymorphism based phylogeny of Francisella tularensis and its application to the development of a strain typing assay
Pandya GA, Holmes MH, Petersen JM, Pradhan S, Karamycheva SA, Wolcott MJ, Molins C, Jones M, Schriefer ME, Fleischmann RD, Peterson SN
PMID: 19811647
Antimicrobial agents and chemotherapy. 2009-10-01; 53.10: 4429-32.
New selectable marker for manipulating the simple genomes of Mycoplasma species
Algire MA, Lartigue C, Thomas DW, Assad-Garcia N, Glass JI, Merryman C
PMID: 19687239