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Publications

PLoS pathogens. 2009-09-01; 5.9: e1000570.
Evolutionarily conserved herpesviral protein interaction networks
Fossum E, Friedel CC, Rajagopala SV, Titz B, Baiker A, Schmidt T, Kraus T, Stellberger T, Rutenberg C, Suthram S, Bandyopadhyay S, Rose D, von Brunn A, Uhlmann M, Zeretzke C, Dong YA, Boulet H, Koegl M, Bailer SM, Koszinowski U, Ideker T, Uetz P, Zimmer R, Haas J
PMID: 19730696
Journal of virology. 2009-09-01; 83.17: 8832-41.
Mixed infection and the genesis of influenza virus diversity
Ghedin E, Fitch A, Boyne A, Griesemer S, Depasse J, Bera J, Zhang X, Halpin RA, Smit M, Jennings L, St George K, Holmes EC, Spiro DJ
PMID: 19553313
Genome research. 2009-09-01; 19.9: 1516-26.
Mobile elements create structural variation: analysis of a complete human genome
Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S, Batzer MA, Jorde LB
PMID: 19439515
BMC biotechnology. 2009-08-23; 9.72.
High quality protein microarray using in situ protein purification
Kwon K, Grose C, Pieper R, Pandya GA, Fleischmann RD, Peterson SN
PMID: 19698181
Applied and environmental microbiology. 2009-08-01; 75.15: 5047-57.
Coastal strains of marine Synechococcus species exhibit increased tolerance to copper shock and a distinctive transcriptional response relative to those of open-ocean strains
Stuart RK, Dupont CL, Johnson DA, Paulsen IT, Palenik B
PMID: 19502430
Nature. 2009-07-16; 460.7253: 352-8.
The genome of the blood fluke Schistosoma mansoni
Berriman M, Haas BJ, LoVerde PT, Wilson RA, Dillon GP, Cerqueira GC, Mashiyama ST, Al-Lazikani B, Andrade LF, Ashton PD, Aslett MA, Bartholomeu DC, Blandin G, Caffrey CR, Coghlan A, Coulson R, Day TA, Delcher A, DeMarco R, Djikeng A, Eyre T, Gamble JA, Ghedin E, Gu Y, Hertz-Fowler C, Hirai H, Hirai Y, Houston R, Ivens A, Johnston DA, Lacerda D, Macedo CD, McVeigh P, Ning Z, Oliveira G, Overington JP, Parkhill J, Pertea M, Pierce RJ, Protasio AV, Quail MA, Rajandream MA, Rogers J, Sajid M, Salzberg SL, Stanke M, Tivey AR, White O, Williams DL, Wortman J, Wu W, Zamanian M, Zerlotini A, Fraser-Liggett CM, Barrell BG, El-Sayed NM
PMID: 19606141
Extremophiles : life under extreme conditions. 2009-07-01; 13.4: 679-85.
Characterization of the intestinal microbiota of two Antarctic notothenioid fish species
Ward NL, Steven B, Penn K, Methé BA, Detrich WH
PMID: 19472032
PloS one. 2009-07-01; 4.7: e6085.
The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms)
Yang JC, Madupu R, Durkin AS, Ekborg NA, Pedamallu CS, Hostetler JB, Radune D, Toms BS, Henrissat B, Coutinho PM, Schwarz S, Field L, Trindade-Silva AE, Soares CA, Elshahawi S, Hanora A, Schmidt EW, Haygood MG, Posfai J, Benner J, Madinger C, Nove J, Anton B, Chaudhary K, Foster J, Holman A, Kumar S, Lessard PA, Luyten YA, Slatko B, Wood N, Wu B, Teplitski M, Mougous JD, Ward N, Eisen JA, Badger JH, Distel DL
PMID: 19568419
Proteome science. 2009-06-29; 7.22.
Comparison of two label-free global quantitation methods, APEX and 2D gel electrophoresis, applied to the Shigella dysenteriae proteome
Kuntumalla S, Braisted JC, Huang ST, Parmar PP, Clark DJ, Alami H, Zhang Q, Donohue-Rolfe A, Tzipori S, Fleischmann RD, Peterson SN, Pieper R
PMID: 19563668
BMC genomics. 2009-06-15; 10.267.
Transcriptomes and pathways associated with infectivity, survival and immunogenicity in Brugia malayi L3
Li BW, Rush AC, Mitreva M, Yin Y, Spiro D, Ghedin E, Weil GJ
PMID: 19527522