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Publications

The ISME journal. 2017-01-01; 11.1: 201-211.
Speciation and ecological success in dimly lit waters: horizontal gene transfer in a green sulfur bacteria bloom unveiled by metagenomic assembly
Llorens-Marès T, Liu Z, Allen LZ, Rusch DB, Craig MT, Dupont CL, Bryant DA, Casamayor EO
PMID: 27392085
mSystems. 2017-01-01; 2.1:
Integrated Regulatory and Metabolic Networks of the Marine Diatom Phaeodactylum tricornutum Predict the Response to Rising CO2 Levels
Levering J, Dupont CL, Allen AE, Palsson BO, Zengler K
PMID: 28217746
mSphere. 2016-12-28; 1.6:
The Denture-Associated Oral Microbiome in Health and Stomatitis
Shi B, Wu T, McLean J, Edlund A, Young Y, He X, Lv H, Zhou X, Shi W, Li H, Lux R
PMID: 28066812
Proceedings of the National Academy of Sciences of the United States of America. 2016-12-20; 113.51: E8344-E8353.
Unique attributes of cyanobacterial metabolism revealed by improved genome-scale metabolic modeling and essential gene analysis
Broddrick JT, Rubin BE, Welkie DG, Du N, Mih N, Diamond S, Lee JJ, Golden SS, Palsson BO
PMID: 27911809
The Journal of infectious diseases. 2016-12-15; 214.12: 1924-1928.
Differences in the Nasopharyngeal Microbiome During Acute Respiratory Tract Infection With Human Rhinovirus and Respiratory Syncytial Virus in Infancy
Rosas-Salazar C, Shilts MH, Tovchigrechko A, Schobel S, Chappell JD, Larkin EK, Shankar J, Yooseph S, Nelson KE, Halpin RA, Moore ML, Anderson LJ, Peebles RS, Das SR, Hartert TV
PMID: 27923952
mSphere. 2016-12-14; 1.6:
A Phylogeny-Based Global Nomenclature System and Automated Annotation Tool for H1 Hemagglutinin Genes from Swine Influenza A Viruses
Anderson TK, Macken CA, Lewis NS, Scheuermann RH, Van Reeth K, Brown IH, Swenson SL, Simon G, Saito T, Berhane Y, Ciacci-Zanella J, Pereda A, Davis CT, Donis RO, Webby RJ, Vincent AL
PMID: 27981236
mBio. 2016-12-13; 7.6:
Comprehensive Genome Analysis of Carbapenemase-Producing Enterobacter spp.: New Insights into Phylogeny, Population Structure, and Resistance Mechanisms
Chavda KD, Chen L, Fouts DE, Sutton G, Brinkac L, Jenkins SG, Bonomo RA, Adams MD, Kreiswirth BN
PMID: 27965456
Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 2016-12-05; 371.1709:
Secondary metabolite arsenal of an opportunistic pathogenic fungus
Bignell E, Cairns TC, Throckmorton K, Nierman WC, Keller NP
PMID: 28080993
International journal of systematic and evolutionary microbiology. 2016-12-01; 66.12: 5452-5459.
Identification and taxonomic characterization of Bordetella pseudohinzii sp. nov. isolated from laboratory-raised mice
Ivanov YV, Linz B, Register KB, Newman JD, Taylor DL, Boschert KR, Le Guyon S, Wilson EF, Brinkac LM, Sanka R, Greco SC, Klender PM, Losada L, Harvill ET
PMID: 27707434
Environmental microbiology. 2016-12-01; 18.12: 4442-4455.
Distribution and expression of microbial rhodopsins in the Baltic Sea and adjacent waters
Brindefalk B, Ekman M, Ininbergs K, Dupont CL, Yooseph S, Pinhassi J, Bergman B
PMID: 27306515