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Publications

Microbiology (Reading, England). 2002-01-01; 148.Pt 1: 123-31.
Regulation of carbon utilization by sulfur availability in Escherichia coli and Salmonella typhimurium
Quan JA, Schneider BL, Paulsen IT, Yamada M, Kredich NM, Saier MH
PMID: 11782505
Bioinformatics (Oxford, England). 2002-01-01; 18.1: 207-8.
Genesis: cluster analysis of microarray data
Sturn A, Quackenbush J, Trajanoski Z
PMID: 11836235
Nucleic acids research. 2002-01-01; 30.1: 56-8.
The EcoCyc Database
Karp PD, Riley M, Saier M, Paulsen IT, Collado-Vides J, Paley SM, Pellegrini-Toole A, Bonavides C, Gama-Castro S
PMID: 11752253
Plant molecular biology. 2002-01-01; 48.1-2: 39-48.
Computational gene finding in plants
Pertea M, Salzberg SL
PMID: 11860211
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology. 2002-01-01; 10.5: 379-87.
Resolution of fluorescence in-situ hybridization mapping on rice mitotic prometaphase chromosomes, meiotic pachytene chromosomes and extended DNA fibers
Cheng Z, Buell CR, Wing RA, Jiang J
PMID: 12296520
Genome biology. 2002-01-01; 3.6: RESEARCH0029.
Full-length messenger RNA sequences greatly improve genome annotation
Haas BJ, Volfovsky N, Town CD, Troukhan M, Alexandrov N, Feldmann KA, Flavell RB, White O, Salzberg SL
PMID: 12093376
Science (New York, N.Y.). 2001-12-14; 294.5550: 2317-23.
The genome of the natural genetic engineer Agrobacterium tumefaciens C58
Wood DW, Setubal JC, Kaul R, Monks DE, Kitajima JP, Okura VK, Zhou Y, Chen L, Wood GE, Almeida NF, Woo L, Chen Y, Paulsen IT, Eisen JA, Karp PD, Bovee D, Chapman P, Clendenning J, Deatherage G, Gillet W, Grant C, Kutyavin T, Levy R, Li MJ, McClelland E, Palmieri A, Raymond C, Rouse G, Saenphimmachak C, Wu Z, Romero P, Gordon D, Zhang S, Yoo H, Tao Y, Biddle P, Jung M, Krespan W, Perry M, Gordon-Kamm B, Liao L, Kim S, Hendrick C, Zhao ZY, Dolan M, Chumley F, Tingey SV, Tomb JF, Gordon MP, Olson MV, Nester EW
PMID: 11743193
Bioinformatics (Oxford, England). 2001-12-01; 17.12: 1123-30.
A probabilistic method for identifying start codons in bacterial genomes
Suzek BE, Ermolaeva MD, Schreiber M, Salzberg SL
PMID: 11751220
Bioinformatics (Oxford, England). 2001-12-01; 17.12: 1093-104.
DNA sequence quality trimming and vector removal
Chou HH, Holmes MH
PMID: 11751217
Molecular and biochemical parasitology. 2001-12-01; 118.2: 133-8.
A status report on the sequencing and annotation of the P. falciparum genome
Gardner MJ
PMID: 11738703