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Publications

Proceedings of the National Academy of Sciences of the United States of America. 2005-03-01; 102.9: 3465-70.
Genomic characterization of non-O1, non-O139 Vibrio cholerae reveals genes for a type III secretion system
Dziejman M, Serruto D, Tam VC, Sturtevant D, Diraphat P, Faruque SM, Rahman MH, Heidelberg JF, Decker J, Li L, Montgomery KT, Grills G, Kucherlapati R, Mekalanos JJ
PMID: 15728357
Science (New York, N.Y.). 2005-02-25; 307.5713: 1321-4.
The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans
Loftus BJ, Fung E, Roncaglia P, Rowley D, Amedeo P, Bruno D, Vamathevan J, Miranda M, Anderson IJ, Fraser JA, Allen JE, Bosdet IE, Brent MR, Chiu R, Doering TL, Donlin MJ, D'Souza CA, Fox DS, Grinberg V, Fu J, Fukushima M, Haas BJ, Huang JC, Janbon G, Jones SJ, Koo HL, Krzywinski MI, Kwon-Chung JK, Lengeler KB, Maiti R, Marra MA, Marra RE, Mathewson CA, Mitchell TG, Pertea M, Riggs FR, Salzberg SL, Schein JE, Shvartsbeyn A, Shin H, Shumway M, Specht CA, Suh BB, Tenney A, Utterback TR, Wickes BL, Wortman JR, Wye NH, Kronstad JW, Lodge JK, Heitman J, Davis RW, Fraser CM, Hyman RW
PMID: 15653466
Nature. 2005-02-24; 433.7028: 865-8.
The genome of the protist parasite Entamoeba histolytica
Loftus B, Anderson I, Davies R, Alsmark UC, Samuelson J, Amedeo P, Roncaglia P, Berriman M, Hirt RP, Mann BJ, Nozaki T, Suh B, Pop M, Duchene M, Ackers J, Tannich E, Leippe M, Hofer M, Bruchhaus I, Willhoeft U, Bhattacharya A, Chillingworth T, Churcher C, Hance Z, Harris B, Harris D, Jagels K, Moule S, Mungall K, Ormond D, Squares R, Whitehead S, Quail MA, Rabbinowitsch E, Norbertczak H, Price C, Wang Z, Guillén N, Gilchrist C, Stroup SE, Bhattacharya S, Lohia A, Foster PG, Sicheritz-Ponten T, Weber C, Singh U, Mukherjee C, El-Sayed NM, Petri WA, Clark CG, Embley TM, Barrell B, Fraser CM, Hall N
PMID: 15729342
Genome. 2005-02-01; 48.1: 125-38.
Genomic analysis of a region encompassing QRfs1 and QRfs2: genes that underlie soybean resistance to sudden death syndrome
Triwitayakorn K, Njiti VN, Iqbal MJ, Yaegashi S, Town C, Lightfoot DA
PMID: 15729404
Bioinformatics (Oxford, England). 2005-02-01; 21.3: 293-306.
Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics
Haft DH, Selengut JD, Brinkac LM, Zafar N, White O
PMID: 15347579
Trends in microbiology. 2005-02-01; 13.2: 56-7.
A virus with big ambitions
Ghedin E, Fraser CM
PMID: 15680763
Infection and immunity. 2005-02-01; 73.2: 1069-80.
Murine macrophage transcriptional responses to Bacillus anthracis infection and intoxication
Bergman NH, Passalacqua KD, Gaspard R, Shetron-Rama LM, Quackenbush J, Hanna PC
PMID: 15664951
BMC bioinformatics. 2005-01-24; 6.16.
Efficient decoding algorithms for generalized hidden Markov model gene finders
Majoros WH, Pertea M, Delcher AL, Salzberg SL
PMID: 15667658
Oncogene. 2005-01-13; 24.3: 489-501.
Autocrine activation of an osteopontin-CD44-Rac pathway enhances invasion and transformation by H-RasV12
Teramoto H, Castellone MD, Malek RL, Letwin N, Frank B, Gutkind JS, Lee NH
PMID: 15516973
Science (New York, N.Y.). 2005-01-07; 307.5706: 105-8.
Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes
Seshadri R, Adrian L, Fouts DE, Eisen JA, Phillippy AM, Methe BA, Ward NL, Nelson WC, Deboy RT, Khouri HM, Kolonay JF, Dodson RJ, Daugherty SC, Brinkac LM, Sullivan SA, Madupu R, Nelson KE, Kang KH, Impraim M, Tran K, Robinson JM, Forberger HA, Fraser CM, Zinder SH, Heidelberg JF
PMID: 15637277