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Publications

Nucleic acids research. 2007-01-01; 35.Database issue: e148.
A bioinformatic filter for improved base-call accuracy and polymorphism detection using the Affymetrix GeneChip whole-genome resequencing platform
Pandya GA, Holmes MH, Sunkara S, Sparks A, Bai Y, Verratti K, Saeed K, Venepally P, Jarrahi B, Fleischmann RD, Peterson SN
PMID: 18006572
Journal of bacteriology. 2007-01-01; 189.1: 388-402.
Regulation of rugosity and biofilm formation in Vibrio cholerae: comparison of VpsT and VpsR regulons and epistasis analysis of vpsT, vpsR, and hapR
Beyhan S, Bilecen K, Salama SR, Casper-Lindley C, Yildiz FH
PMID: 17071756
Nucleic acids research. 2007-01-01; 35.Database issue: D883-7.
The TIGR Rice Genome Annotation Resource: improvements and new features
Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, Childs K, Thibaud-Nissen F, Malek RL, Lee Y, Zheng L, Orvis J, Haas B, Wortman J, Buell CR
PMID: 17145706
Molecular systems biology. 2007-01-01; 3.128.
The protein network of bacterial motility
Rajagopala SV, Titz B, Goll J, Parrish JR, Wohlbold K, McKevitt MT, Palzkill T, Mori H, Finley RL, Uetz P
PMID: 17667950
Nucleic acids research. 2007-01-01; 35.Database issue: D274-9.
TransportDB: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channels
Ren Q, Chen K, Paulsen IT
PMID: 17135193
Journal of bacteriology. 2007-01-01; 189.1: 531-9.
Complete and SOS-mediated response of Staphylococcus aureus to the antibiotic ciprofloxacin
Cirz RT, Jones MB, Gingles NA, Minogue TD, Jarrahi B, Peterson SN, Romesberg FE
PMID: 17085555
Journal of bacteriology. 2007-01-01; 189.1: 52-64.
Complete sequence analysis of novel plasmids from emetic and periodontal Bacillus cereus isolates reveals a common evolutionary history among the B. cereus-group plasmids, including Bacillus anthracis pXO1
Rasko DA, Rosovitz MJ, Økstad OA, Fouts DE, Jiang L, Cer RZ, Kolstø AB, Gill SR, Ravel J
PMID: 17041058
Current pharmaceutical design. 2007-01-01; 13.14: 1415-36.
Computational and experimental approaches for modeling gene regulatory networks
Goutsias J, Lee NH
PMID: 17504165
Nature methods. 2007-01-01; 4.1: 35-7.
Sensitive and specific method for detecting G protein-coupled receptor mRNAs
Hansen A, Chen Y, Inman JM, Phan QN, Qi ZQ, Xiang CC, Palkovits M, Cherman N, Kuznetsov SA, Robey PG, Mezey E, Brownstein MJ
PMID: 17115035
Nucleic acids research. 2007-01-01; 35.Database issue: D260-4.
TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes
Selengut JD, Haft DH, Davidsen T, Ganapathy A, Gwinn-Giglio M, Nelson WC, Richter AR, White O
PMID: 17151080