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Publications

Nature. 2008-11-06; 456.7218: 49-51.
Human genetics: Individual genomes diversify
Levy S, Strausberg RL
PMID: 18987731
The ISME journal. 2008-11-01; 2.11: 1112-21.
Lysogenic virus-host interactions predominate at deep-sea diffuse-flow hydrothermal vents
Williamson SJ, Cary SC, Williamson KE, Helton RR, Bench SR, Winget D, Wommack KE
PMID: 18719614
Applied and environmental microbiology. 2008-11-01; 74.21: 6720-9.
Hydrogenomics of the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus
van de Werken HJ, Verhaart MR, VanFossen AL, Willquist K, Lewis DL, Nichols JD, Goorissen HP, Mongodin EF, Nelson KE, van Niel EW, Stams AJ, Ward DE, de Vos WM, van der Oost J, Kelly RM, Kengen SW
PMID: 18776029
Letters in applied microbiology. 2008-11-01; 47.5: 439-44.
Involvement of Streptococcus mutans regulator RR11 in oxidative stress response during biofilm growth and in the development of genetic competence
Perry JA, Lévesque CM, Suntharaligam P, Mair RW, Bu M, Cline RT, Peterson SN, Cvitkovitch DG
PMID: 19146535
Nature. 2008-10-09; 455.7214: 757-63.
Comparative genomics of the neglected human malaria parasite Plasmodium vivax
Carlton JM, Adams JH, Silva JC, Bidwell SL, Lorenzi H, Caler E, Crabtree J, Angiuoli SV, Merino EF, Amedeo P, Cheng Q, Coulson RM, Crabb BS, Del Portillo HA, Essien K, Feldblyum TV, Fernandez-Becerra C, Gilson PR, Gueye AH, Guo X, Kang'a S, Kooij TW, Korsinczky M, Meyer EV, Nene V, Paulsen I, White O, Ralph SA, Ren Q, Sargeant TJ, Salzberg SL, Stoeckert CJ, Sullivan SA, Yamamoto MM, Hoffman SL, Wortman JR, Gardner MJ, Galinski MR, Barnwell JW, Fraser-Liggett CM
PMID: 18843361
PLoS genetics. 2008-10-03; 4.10: e1000211.
High-throughput phenotypic characterization of Pseudomonas aeruginosa membrane transport genes
Johnson DA, Tetu SG, Phillippy K, Chen J, Ren Q, Paulsen IT
PMID: 18833300
Nature biotechnology. 2008-10-01; 26.10: 1161-8.
Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum
van den Berg MA, Albang R, Albermann K, Badger JH, Daran JM, Driessen AJ, Garcia-Estrada C, Fedorova ND, Harris DM, Heijne WH, Joardar V, Kiel JA, Kovalchuk A, Martín JF, Nierman WC, Nijland JG, Pronk JT, Roubos JA, van der Klei IJ, van Peij NN, Veenhuis M, von Döhren H, Wagner C, Wortman J, Bovenberg RA
PMID: 18820685
Journal of bacteriology. 2008-10-01; 190.20: 6779-94.
Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5
Fricke WF, Wright MS, Lindell AH, Harkins DM, Baker-Austin C, Ravel J, Stepanauskas R
PMID: 18708504
Antimicrobial agents and chemotherapy. 2008-10-01; 52.10: 3604-11.
RamA confers multidrug resistance in Salmonella enterica via increased expression of acrB, which is inhibited by chlorpromazine
Bailey AM, Paulsen IT, Piddock LJ
PMID: 18694955
Journal of bacteriology. 2008-10-01; 190.20: 6881-93.
The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates
Rasko DA, Rosovitz MJ, Myers GS, Mongodin EF, Fricke WF, Gajer P, Crabtree J, Sebaihia M, Thomson NR, Chaudhuri R, Henderson IR, Sperandio V, Ravel J
PMID: 18676672