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Publications

BMC genomics. 2008-12-10; 9.595.
Genome wide survey, discovery and evolution of repetitive elements in three Entamoeba species
Lorenzi H, Thiagarajan M, Haas B, Wortman J, Hall N, Caler E
PMID: 19077187
BMC bioinformatics. 2008-12-09; 9.529.
The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results
Braisted JC, Kuntumalla S, Vogel C, Marcotte EM, Rodrigues AR, Wang R, Huang ST, Ferlanti ES, Saeed AI, Fleischmann RD, Peterson SN, Pieper R
PMID: 19068132
Journal of virology. 2008-12-01; 82.24: 12422-31.
Bovine-like coronaviruses isolated from four species of captive wild ruminants are homologous to bovine coronaviruses, based on complete genomic sequences
Alekseev KP, Vlasova AN, Jung K, Hasoksuz M, Zhang X, Halpin R, Wang S, Ghedin E, Spiro D, Saif LJ
PMID: 18842722
The ISME journal. 2008-12-01; 2.12: 1194-212.
Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter
Ivars-Martinez E, Martin-Cuadrado AB, D'Auria G, Mira A, Ferriera S, Johnson J, Friedman R, Rodriguez-Valera F
PMID: 18670397
Experimental parasitology. 2008-12-01; 120.4: 357-63.
Schistosoma mansoni: Microarray analysis of gene expression induced by host sex
Waisberg M, Lobo FP, Cerqueira GC, Passos LK, Carvalho OS, El-Sayed NM, Franco GR
PMID: 18822286
BMC genomics. 2008-11-27; 9.566.
Genomic islands from five strains of Burkholderia pseudomallei
Tuanyok A, Leadem BR, Auerbach RK, Beckstrom-Sternberg SM, Beckstrom-Sternberg JS, Mayo M, Wuthiekanun V, Brettin TS, Nierman WC, Peacock SJ, Currie BJ, Wagner DM, Keim P
PMID: 19038032
BMC genomics. 2008-11-26; 9.562.
Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
Coyne RS, Thiagarajan M, Jones KM, Wortman JR, Tallon LJ, Haas BJ, Cassidy-Hanley DM, Wiley EA, Smith JJ, Collins K, Lee SR, Couvillion MT, Liu Y, Garg J, Pearlman RE, Hamilton EP, Orias E, Eisen JA, Methé BA
PMID: 19036158
Bioinformatics (Oxford, England). 2008-11-15; 24.22: 2622-7.
MPI-LIT: a literature-curated dataset of microbial binary protein--protein interactions
Rajagopala SV, Goll J, Gowda ND, Sunil KC, Titz B, Mukherjee A, Mary SS, Raviswaran N, Poojari CS, Ramachandra S, Shtivelband S, Blazie SM, Hofmann J, Uetz P
PMID: 18786976
BMC genomics. 2008-11-15; 9.542.
Analysis of the Pythium ultimum transcriptome using Sanger and Pyrosequencing approaches
Cheung F, Win J, Lang JM, Hamilton J, Vuong H, Leach JE, Kamoun S, André Lévesque C, Tisserat N, Buell CR
PMID: 19014603
BMC biochemistry. 2008-11-11; 9.29.
The FF domains of yeast U1 snRNP protein Prp40 mediate interactions with Luc7 and Snu71
Ester C, Uetz P
PMID: 19014439