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Publications

Journal of the American Chemical Society. 2012-01-11; 134.1: 305-14.
AirSR, a [2Fe-2S] cluster-containing two-component system, mediates global oxygen sensing and redox signaling in Staphylococcus aureus
Sun F, Ji Q, Jones MB, Deng X, Liang H, Frank B, Telser J, Peterson SN, Bae T, He C
PMID: 22122613
Nucleic acids research. 2012-01-01; 40.Database issue: D306-12.
InterPro in 2011: new developments in the family and domain prediction database
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S, de Castro E, Coggill P, Corbett M, Das U, Daugherty L, Duquenne L, Finn RD, Fraser M, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, McMenamin C, Mi H, Mutowo-Muellenet P, Mulder N, Natale D, Orengo C, Pesseat S, Punta M, Quinn AF, Rivoire C, Sangrador-Vegas A, Selengut JD, Sigrist CJ, Scheremetjew M, Tate J, Thimmajanarthanan M, Thomas PD, Wu CH, Yeats C, Yong SY
PMID: 22096229
PLoS genetics. 2012-01-01; 8.7: e1002626.
Cell contact-dependent outer membrane exchange in myxobacteria: genetic determinants and mechanism
Pathak DT, Wei X, Bucuvalas A, Haft DH, Gerloff DL, Wall D
PMID: 22511878
PloS one. 2012-01-01; 7.5: e36427.
Optimizing read mapping to reference genomes to determine composition and species prevalence in microbial communities
Martin J, Sykes S, Young S, Kota K, Sanka R, Sheth N, Orvis J, Sodergren E, Wang Z, Weinstock GM, Mitreva M
PMID: 22719831
PloS one. 2012-01-01; 7.5: e32219.
Identifying low pH active and lactate-utilizing taxa within oral microbiome communities from healthy children using stable isotope probing techniques
McLean JS, Fansler SJ, Majors PD, McAteer K, Allen LZ, Shirtliff ME, Lux R, Shi W
PMID: 22403637
PloS one. 2012-01-01; 7.5: e51762.
A novel SERPINA1 mutation causing serum alpha(1)-antitrypsin deficiency
Saunders DN, Tindall EA, Shearer RF, Roberson J, Decker A, Wilson JA, Hayes VM
PMID: 23251618
PloS one. 2012-01-01; 7.5: e34064.
The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity
Ziemert N, Podell S, Penn K, Badger JH, Allen E, Jensen PR
PMID: 22479523
PloS one. 2012-01-01; 7.3: e33903.
Comparative omics-driven genome annotation refinement: application across Yersiniae
Schrimpe-Rutledge AC, Jones MB, Chauhan S, Purvine SO, Sanford JA, Monroe ME, Brewer HM, Payne SH, Ansong C, Frank BC, Smith RD, Peterson SN, Motin VL, Adkins JN
PMID: 22479471
PloS one. 2012-01-01; 7.5: e33604.
Transcriptional and proteomic analysis of the Aspergillus fumigatus ΔprtT protease-deficient mutant
Hagag S, Kubitschek-Barreira P, Neves GW, Amar D, Nierman W, Shalit I, Shamir R, Lopes-Bezerra L, Osherov N
PMID: 22514608
PloS one. 2012-01-01; 7.3: e46688.
Predicting the functional effect of amino acid substitutions and indels
Choi Y, Sims GE, Murphy S, Miller JR, Chan AP
PMID: 23056405