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Publications

BMC genomics. 2015-08-22; 16.1: 631.
Stool microbiota composition is associated with the prospective risk of Plasmodium falciparum infection
Yooseph S, Kirkness EF, Tran TM, Harkins DM, Jones MB, Torralba MG, O'Connell E, Nutman TB, Doumbo S, Doumbo OK, Traore B, Crompton PD, Nelson KE
PMID: 26296559
Bioinformatics (Oxford, England). 2015-08-15; 31.16: 2745-7.
PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels
Choi Y, Chan AP
PMID: 25851949
The Journal of infectious diseases. 2015-08-15; 212.4: 578-84.
The Interplay Between Host Genetic Variation, Viral Replication, and Microbial Translocation in Untreated HIV-Infected Individuals
Aubert V, Battegay M, Bernasconi E, Böni J, Bucher HC, Burton-Jeangros C, Calmy A, Cavassini M, Dollenmaier G, Egger M, Elzi L, Fehr J, Fellay J, Furrer H, Fux CA, Gorgievski M, Günthard H, Haerry D, Hasse B, Hirsch HH, Hoffmann M, Hösli I, Kahlert C, Kaiser L, Keiser O, Klimkait T, Kouyos R, Kovari H, Ledergerber B, Martinetti G, Martinez de Tejada B, Metzner K, Müller N, Nadal D, Nicca D, Pantaleo G, Rauch A, Regenass S, Rickenbach M, Rudin C, Schöni-Affolter F, Schmid P, Schüpbach J, Speck R, Tarr P, Telenti A, Trkola A, Vernazza P, Weber R, Yerly S
PMID: 25701868
Proceedings of the National Academy of Sciences of the United States of America. 2015-08-11; 112.32: 9938-43.
Phytoplankton-bacterial interactions mediate micronutrient colimitation at the coastal Antarctic sea ice edge
Bertrand EM, McCrow JP, Moustafa A, Zheng H, McQuaid JB, Delmont TO, Post AF, Sipler RE, Spackeen JL, Xu K, Bronk DA, Hutchins DA, Allen AE
PMID: 26221022
Genome biology and evolution. 2015-08-08; 7.9: 2473-83.
Genome-Wide Evolutionary Analyses of G1P[8] Strains Isolated Before and After Rotavirus Vaccine Introduction
Zeller M, Donato C, Trovão NS, Cowley D, Heylen E, Donker NC, McAllen JK, Akopov A, Kirkness EF, Lemey P, Van Ranst M, Matthijnssens J, Kirkwood CD
PMID: 26254487
Journal of proteome research. 2015-08-07; 14.8: 3123-35.
Quantitative Differences in the Urinary Proteome of Siblings Discordant for Type 1 Diabetes Include Lysosomal Enzymes
Suh MJ, Tovchigrechko A, Thovarai V, Rolfe MA, Torralba MG, Wang J, Adkins JN, Webb-Robertson BJ, Osborne W, Cogen FR, Kaplowitz PB, Metz TO, Nelson KE, Madupu R, Pieper R
PMID: 26143644
Current biology : CB. 2015-08-03; 25.15: 1988-92.
Modeling the 3D geometry of the cortical surface with genetic ancestry
Fan CC, Bartsch H, Schork AJ, Chen CH, Wang Y, Lo MT, Brown TT, Kuperman JM, Hagler DJ, Schork NJ, Jernigan TL, Dale AM, Pediatric Imaging, Neurocognition, and Genetics Study
PMID: 26166778
The Journal of general virology. 2015-08-01; 96.8: 2050-60.
Influenza A virus evolution and spatio-temporal dynamics in Eurasian wild birds: a phylogenetic and phylogeographical study of whole-genome sequence data
Lewis NS, Verhagen JH, Javakhishvili Z, Russell CA, Lexmond P, Westgeest KB, Bestebroer TM, Halpin RA, Lin X, Ransier A, Fedorova NB, Stockwell TB, Latorre-Margalef N, Olsen B, Smith G, Bahl J, Wentworth DE, Waldenström J, Fouchier RA, de Graaf M
PMID: 25904147
Emerging infectious diseases. 2015-08-01; 21.8: 1330-8.
Phylogeography of Influenza A(H3N2) Virus in Peru, 2010-2012
Pollett S, Nelson MI, Kasper M, Tinoco Y, Simons M, Romero C, Silva M, Lin X, Halpin RA, Fedorova N, Stockwell TB, Wentworth D, Holmes EC, Bausch DG
PMID: 26196599
Genome biology. 2015-07-21; 16.1: 143.
A novel method of consensus pan-chromosome assembly and large-scale comparative analysis reveal the highly flexible pan-genome of Acinetobacter baumannii
Chan AP, Sutton G, Depew J, Krishnakumar R, Choi Y, Huang XZ, Beck E, Harkins DM, Kim M, Lesho EP, Nikolich MP, Fouts DE
PMID: 26195261