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Publications

Proceedings of the National Academy of Sciences of the United States of America. 2017-08-01; 114.31: 8342-8347.
Severe viral respiratory infections in children with IFIH1 loss-of-function mutations
Asgari S, Schlapbach LJ, Anchisi S, Hammer C, Bartha I, Junier T, Mottet-Osman G, Posfay-Barbe KM, Longchamp D, Stocker M, Cordey S, Kaiser L, Riedel T, Kenna T, Long D, Schibler A, Telenti A, Tapparel C, McLaren PJ, Garcin D, Fellay J
PMID: 28716935
PLoS neglected tropical diseases. 2017-08-01; 11.8: e0005693.
Evolution and spread of Venezuelan equine encephalitis complex alphavirus in the Americas
Forrester NL, Wertheim JO, Dugan VG, Auguste AJ, Lin D, Adams AP, Chen R, Gorchakov R, Leal G, Estrada-Franco JG, Pandya J, Halpin RA, Hari K, Jain R, Stockwell TB, Das SR, Wentworth DE, Smith MD, Kosakovsky Pond SL, Weaver SC
PMID: 28771475
The Journal of antimicrobial chemotherapy. 2017-08-01; 72.8: 2249-2258.
Genomic epidemiology of global VIM-producing Enterobacteriaceae
Matsumura Y, Peirano G, Devinney R, Bradford PA, Motyl MR, Adams MD, Chen L, Kreiswirth B, Pitout JDD
PMID: 28520983
The Plant cell. 2017-08-01; 29.8: 2047-2070.
Nitrate Reductase Knockout Uncouples Nitrate Transport from Nitrate Assimilation and Drives Repartitioning of Carbon Flux in a Model Pennate Diatom
McCarthy JK, McCarthy JK, Smith SR, McCrow JP, Tan M, Zheng H, Beeri K, Roth RA, Roth R, Lichtle C, Lichtle C, Goodenough U, Bowler C, Bowler CP, Dupont CL, Dupont CL, Allen AE
PMID: 28765511
Genome announcements. 2017-07-27; 5.30:
Identification of Dezidougou Virus in a DAK AR 41524 Zika Virus Stock
Shrivastava S, Puri V, Fedorova N, Amedeo P, Stockwell TB, Shabman RS, Rashid S, Pickett BE
PMID: 28751385
Proceedings of the National Academy of Sciences of the United States of America. 2017-07-25; 114.30: 8059-8064.
Fast and accurate HLA typing from short-read next-generation sequence data with xHLA
Xie C, Yeo ZX, Wong M, Piper J, Long T, Kirkness EF, Biggs WH, Bloom K, Spellman S, Vierra-Green C, Brady C, Scheuermann RH, Telenti A, Howard S, Brewerton S, Turpaz Y, Venter JC
PMID: 28674023
BMC genomics. 2017-07-19; 18.1: 541.
Hybrid assembly with long and short reads improves discovery of gene family expansions
Miller JR, Zhou P, Mudge J, Gurtowski J, Lee H, Ramaraj T, Walenz BP, Liu J, Stupar RM, Denny R, Song L, Singh N, Maron LG, McCouch SR, McCombie WR, Schatz MC, Tiffin P, Young ND, Silverstein KAT
PMID: 28724409
mSystems. 2017-07-18; 2.4:
Metabolic Fingerprints from the Human Oral Microbiome Reveal a Vast Knowledge Gap of Secreted Small Peptidic Molecules
Edlund A, Garg N, Mohimani H, Gurevich A, He X, Shi W, Dorrestein PC, McLean JS
PMID: 28761934
Proceedings of the National Academy of Sciences of the United States of America. 2017-07-18; 114.29: E6015-E6024.
Diatom centromeres suggest a mechanism for nuclear DNA acquisition
Diner RE, Noddings CM, Lian NC, Kang AK, McQuaid JB, Jablanovic J, Espinoza JL, Nguyen NA, Anzelmatti MA, Jansson J, Bielinski VA, Karas BJ, Dupont CL, Allen AE, Weyman PD
PMID: 28673987
Virus research. 2017-07-15; 239.55-68.
Exploring viral infection using single-cell sequencing
Rato S, Golumbeanu M, Telenti A, Ciuffi A
PMID: 27816430