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Publications

Theoretical population biology. 2002-06-01; 61.4: 481-7.
Phylogenetic analysis and gene functional predictions: phylogenomics in action
Eisen JA, Wu M
PMID: 12167367
Science (New York, N.Y.). 2002-05-31; 296.5573: 1661-71.
A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome
Mural RJ, Adams MD, Myers EW, Smith HO, Miklos GL, Wides R, Halpern A, Li PW, Sutton GG, Nadeau J, Salzberg SL, Holt RA, Kodira CD, Lu F, Chen L, Deng Z, Evangelista CC, Gan W, Heiman TJ, Li J, Li Z, Merkulov GV, Milshina NV, Naik AK, Qi R, Shue BC, Wang A, Wang J, Wang X, Yan X, Ye J, Yooseph S, Zhao Q, Zheng L, Zhu SC, Biddick K, Bolanos R, Delcher AL, Dew IM, Fasulo D, Flanigan MJ, Huson DH, Kravitz SA, Miller JR, Mobarry CM, Reinert K, Remington KA, Zhang Q, Zheng XH, Nusskern DR, Lai Z, Lei Y, Zhong W, Yao A, Guan P, Ji RR, Gu Z, Wang ZY, Zhong F, Xiao C, Chiang CC, Yandell M, Wortman JR, Amanatides PG, Hladun SL, Pratts EC, Johnson JE, Dodson KL, Woodford KJ, Evans CA, Gropman B, Rusch DB, Venter E, Wang M, Smith TJ, Houck JT, Tompkins DE, Haynes C, Jacob D, Chin SH, Allen DR, Dahlke CE, Sanders R, Li K, Liu X, Levitsky AA, Majoros WH, Chen Q, Xia AC, Lopez JR, Donnelly MT, Newman MH, Glodek A, Kraft CL, Nodell M, Ali F, An HJ, Baldwin-Pitts D, Beeson KY, Cai S, Carnes M, Carver A, Caulk PM, Center A, Chen YH, Cheng ML, Coyne MD, Crowder M, Danaher S, Davenport LB, Desilets R, Dietz SM, Doup L, Dullaghan P, Ferriera S, Fosler CR, Gire HC, Gluecksmann A, Gocayne JD, Gray J, Hart B, Haynes J, Hoover J, Howland T, Ibegwam C, Jalali M, Johns D, Kline L, Ma DS, MacCawley S, Magoon A, Mann F, May D, McIntosh TC, Mehta S, Moy L, Moy MC, Murphy BJ, Murphy SD, Nelson KA, Nuri Z, Parker KA, Prudhomme AC, Puri VN, Qureshi H, Raley JC, Reardon MS, Regier MA, Rogers YH, Romblad DL, Schutz J, Scott JL, Scott R, Sitter CD, Smallwood M, Sprague AC, Stewart E, Strong RV, Suh E, Sylvester K, Thomas R, Tint NN, Tsonis C, Wang G, Wang G, Williams MS, Williams SM, Windsor SM, Wolfe K, Wu MM, Zaveri J, Chaturvedi K, Gabrielian AE, Ke Z, Sun J, Subramanian G, Venter JC, Pfannkoch CM, Barnstead M, Stephenson LD
PMID: 12040188
Proceedings of the National Academy of Sciences of the United States of America. 2002-05-28; 99.11: 7652-7.
Genomewide identification of proteins secreted by the Hrp type III protein secretion system of Pseudomonas syringae pv. tomato DC3000
Petnicki-Ocwieja T, Schneider DJ, Tam VC, Chancey ST, Shan L, Jamir Y, Schechter LM, Janes MD, Buell CR, Tang X, Collmer A, Alfano JR
PMID: 12032338
Nature. 2002-05-23; 417.6887: 379.
Restricting genome data won't stop bioterrorism
Read TD, Parkhill J
PMID: 12024189
Biochimica et biophysica acta. 2002-05-23; 1582.1-3: 89-93.
Homodimerization and heterodimerization of S1P/EDG sphingosine-1-phosphate receptors
Van Brocklyn JR, Behbahani B, Lee NH
PMID: 12069814
The Journal of biological chemistry. 2002-05-17; 277.20: 17994-8001.
Molecular dissection of the functional domains of a unique, tartrate-resistant, surface membrane acid phosphatase in the primitive human pathogen Leishmania donovani
Shakarian AM, Joshi MB, Ghedin E, Dwyer DM
PMID: 11882658
BMC bioinformatics. 2002-05-16; 3.14.
RIO: analyzing proteomes by automated phylogenomics using resampled inference of orthologs
Zmasek CM, Eddy SR
PMID: 12028595
Proceedings of the National Academy of Sciences of the United States of America. 2002-05-14; 99.10: 6573-8.
Identification of in vivo expressed vaccine candidate antigens from Staphylococcus aureus
Etz H, Minh DB, Henics T, Dryla A, Winkler B, Triska C, Boyd AP, Söllner J, Schmidt W, von Ahsen U, Buschle M, Gill SR, Kolonay J, Khalak H, Fraser CM, von Gabain A, Nagy E, Meinke A
PMID: 11997460
Proceedings of the National Academy of Sciences of the United States of America. 2002-04-16; 99.8: 5261-6.
Comprehensive human genome amplification using multiple displacement amplification
Dean FB, Hosono S, Fang L, Wu X, Faruqi AF, Bray-Ward P, Sun Z, Zong Q, Du Y, Du J, Driscoll M, Song W, Kingsmore SF, Egholm M, Lasken RS
PMID: 11959976
The Journal of biological chemistry. 2002-04-12; 277.15: 13059-66.
Identification of Myc-mediated death response pathways by microarray analysis
Yu Q, He M, Lee NH, Liu ET
PMID: 11821411