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Publications

Nucleic acids research. 2003-01-01; 31.1: 371-3.
The TIGRFAMs database of protein families
Haft DH, Selengut JD, White O
PMID: 12520025
Cold Spring Harbor symposia on quantitative biology. 2003-01-01; 68.171-7.
Building comparative maps using 1.5x sequence coverage: human chromosome 1p and the canine genome
Guyon R, Kirkness EF, Lorentzen TD, Hitte C, Comstock KE, Quignon P, Derrien T, André C, Fraser CM, Galibert F, Ostrander EA
PMID: 15338615
Nucleic acids research. 2003-01-01; 31.1: 234-6.
ToxoDB: accessing the Toxoplasma gondii genome
Kissinger JC, Gajria B, Li L, Paulsen IT, Roos DS
PMID: 12519989
Genome biology. 2003-01-01; 4.1: R5.
Assessing unmodified 70-mer oligonucleotide probe performance on glass-slide microarrays
Wang HY, Malek RL, Kwitek AE, Greene AS, Luu TV, Behbahani B, Frank B, Quackenbush J, Lee NH
PMID: 12540297
Cytogenetic and genome research. 2003-01-01; 102.1-4: 347-54.
Sequence analysis of a rainbow trout cDNA library and creation of a gene index
Rexroad CE, Lee Y, Keele JW, Karamycheva S, Brown G, Koop B, Gahr SA, Palti Y, Quackenbush J
PMID: 14970727
Nucleic acids research. 2003-01-01; 31.1: 315-8.
The InterPro Database, 2003 brings increased coverage and new features
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, Falquet L, Fleischmann W, Griffiths-Jones S, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Lonsdale D, Silventoinen V, Orchard SE, Pagni M, Peyruc D, Ponting CP, Selengut JD, Servant F, Sigrist CJ, Vaughan R, Zdobnov EM
PMID: 12520011
Genome biology. 2003-01-01; 4.1: 336.
Open-source software accelerates bioinformatics
Quackenbush J
PMID: 12952530
Genome biology. 2003-01-01; 4.1: R80.
Comparison of the canine and human olfactory receptor gene repertoires
Quignon P, Kirkness E, Cadieu E, Touleimat N, Guyon R, Renier C, Hitte C, André C, Fraser C, Galibert F
PMID: 14659017
Veterinary microbiology. 2002-12-20; 90.1-4: 249-61.
Sugar metabolism by Brucellae
Essenberg RC, Seshadri R, Nelson K, Paulsen I
PMID: 12414147
Nature. 2002-12-05; 420.6915: 563-73.
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, Nogami A, Schönbach C, Gojobori T, Baldarelli R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A, Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V, Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF, Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ, Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL, Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR, Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K, Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R, Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C, Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z, Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N, Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K, Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A, Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M, Waterston R, Lander ES, Rogers J, Birney E, Hayashizaki Y, FANTOM Consortium, RIKEN Genome Exploration Research Group Phase I & II Team
PMID: 12466851