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Publications

Science (New York, N.Y.). 2005-01-07; 307.5706: 82-6.
A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses
Hall N, Karras M, Raine JD, Carlton JM, Kooij TW, Berriman M, Florens L, Janssen CS, Pain A, Christophides GK, James K, Rutherford K, Harris B, Harris D, Churcher C, Quail MA, Ormond D, Doggett J, Trueman HE, Mendoza J, Bidwell SL, Rajandream MA, Carucci DJ, Yates JR, Kafatos FC, Janse CJ, Barrell B, Turner CM, Waters AP, Sinden RE
PMID: 15637271
Science (New York, N.Y.). 2005-01-07; 307.5706: 105-8.
Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes
Seshadri R, Adrian L, Fouts DE, Eisen JA, Phillippy AM, Methe BA, Ward NL, Nelson WC, Deboy RT, Khouri HM, Kolonay JF, Dodson RJ, Daugherty SC, Brinkac LM, Sullivan SA, Madupu R, Nelson KE, Kang KH, Impraim M, Tran K, Robinson JM, Forberger HA, Fraser CM, Zinder SH, Heidelberg JF
PMID: 15637277
BMC bioinformatics. 2005-01-05; 6.2.
Visualization of comparative genomic analyses by BLAST score ratio
Rasko DA, Myers GS, Ravel J
PMID: 15634352
PLoS biology. 2005-01-04; 3.1: e15.
Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species
Fouts DE, Mongodin EF, Mandrell RE, Miller WG, Rasko DA, Ravel J, Brinkac LM, Deboy RT, Parker CT, Daugherty SC, Dodson RJ, Durkin AS, Madupu R, Sullivan SA, Shetty JU, Ayodeji MA, Shvartsbeyn A, Schatz MC, Badger JH, Fraser CM, Nelson KE
PMID: 15660156
Genome biology. 2005-01-01; 6.1: R10.
Microarray-based resequencing of multiple Bacillus anthracis isolates
Zwick ME, Mcafee F, Cutler DJ, Read TD, Ravel J, Bowman GR, Galloway DR, Mateczun A
PMID: 15642093
PLoS biology. 2005-01-01; 3.1: e13.
Sorghum genome sequencing by methylation filtration
Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
PMID: 15660154
Nucleic acids research. 2005-01-01; 33.Database issue: D334-7.
EcoCyc: a comprehensive database resource for Escherichia coli
Keseler IM, Collado-Vides J, Gama-Castro S, Ingraham J, Paley S, Paulsen IT, Peralta-Gil M, Karp PD
PMID: 15608210
Nucleic acids research. 2005-01-01; 33.Database issue: 2980-92.
Composite genome map and recombination parameters derived from three archetypal lineages of Toxoplasma gondii
Khan A, Taylor S, Su C, Mackey AJ, Boyle J, Cole R, Glover D, Tang K, Paulsen IT, Berriman M, Boothroyd JC, Pfefferkorn ER, Dubey JP, Ajioka JW, Roos DS, Wootton JC, Sibley LD
PMID: 15911631
The Journal of heredity. 2005-01-01; 96.7: 759-63.
Exclusion of candidate genes for canine SRY-negative XX sex reversal
Kothapalli K, Kirkness E, Pujar S, Van Wormer R, Meyers-Wallen VN
PMID: 16267164
Molecular biology and evolution. 2005-01-01; 22.1: 126-34.
A potentially functional mariner transposable element in the protist Trichomonas vaginalis
Silva JC, Bastida F, Bidwell SL, Johnson PJ, Carlton JM
PMID: 15371525