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Publications

Nature methods. 2005-05-01; 2.5: 337-44.
Independence and reproducibility across microarray platforms
Larkin JE, Frank BC, Gavras H, Sultana R, Quackenbush J
PMID: 15846360
Bioinformatics (Oxford, England). 2005-05-01; 21.9: 1782-8.
Efficient implementation of a generalized pair hidden Markov model for comparative gene finding
Majoros WH, Pertea M, Salzberg SL
PMID: 15691859
Applied and environmental microbiology. 2005-05-01; 71.5: 2530-8.
DNA microarray analysis of nitrogen fixation and Fe(III) reduction in Geobacter sulfurreducens
Methé BA, Webster J, Nevin K, Butler J, Lovley DR
PMID: 15870343
Medical mycology. 2005-05-01; 43 Suppl 1.S313-9.
The ergosterol biosynthesis pathway, transporter genes, and azole resistance in Aspergillus fumigatus
Ferreira ME, Colombo AL, Paulsen I, Ren Q, Wortman J, Huang J, Goldman MH, Goldman GH
PMID: 16110826
Molecular microbiology. 2005-05-01; 56.3: 625-37.
Promoter architecture and response to a positive regulator of archaeal transcription
Ouhammouch M, Langham GE, Hausner W, Simpson AJ, El-Sayed NM, Geiduschek EP
PMID: 15819620
Applied and environmental microbiology. 2005-05-01; 71.5: 2209-13.
Toward a system of microbial forensics: from sample collection to interpretation of evidence
Budowle B, Schutzer SE, Ascher MS, Atlas RM, Burans JP, Chakraborty R, Dunn JJ, Fraser CM, Franz DR, Leighton TJ, Morse SA, Murch RS, Ravel J, Rock DL, Slezak TR, Velsko SP, Walsh AC, Walters RA
PMID: 15870301
Journal of bacteriology. 2005-05-01; 187.10: 3339-51.
Global transcriptional and proteomic analysis of the Sig1 heat shock regulon of Deinococcus radiodurans
Schmid AK, Howell HA, Battista JR, Peterson SN, Lidstrom ME
PMID: 15866918
Infection and immunity. 2005-05-01; 73.5: 2863-72.
Boosting of DNA vaccine-elicited gamma interferon responses in humans by exposure to malaria parasites
Wang R, Richie TL, Baraceros MF, Rahardjo N, Gay T, Banania JG, Charoenvit Y, Epstein JE, Luke T, Freilich DA, Norman J, Hoffman SL
PMID: 15845492
Nature methods. 2005-05-01; 2.5: 351-6.
Standardizing global gene expression analysis between laboratories and across platforms
Bammler T, Beyer RP, Bhattacharya S, Boorman GA, Boyles A, Bradford BU, Bumgarner RE, Bushel PR, Chaturvedi K, Choi D, Cunningham ML, Deng S, Dressman HK, Fannin RD, Farin FM, Freedman JH, Fry RC, Harper A, Humble MC, Hurban P, Kavanagh TJ, Kaufmann WK, Kerr KF, Jing L, Lapidus JA, Lasarev MR, Li J, Li YJ, Lobenhofer EK, Lu X, Malek RL, Milton S, Nagalla SR, O'malley JP, Palmer VS, Pattee P, Paules RS, Perou CM, Phillips K, Qin LX, Qiu Y, Quigley SD, Rodland M, Rusyn I, Samson LD, Schwartz DA, Shi Y, Shin JL, Sieber SO, Slifer S, Speer MC, Spencer PS, Sproles DI, Swenberg JA, Suk WA, Sullivan RC, Tian R, Tennant RW, Todd SA, Tucker CJ, Van Houten B, Weis BK, Xuan S, Zarbl H, Members of the Toxicogenomics Research Consortium
PMID: 15846362
International journal of systematic and evolutionary microbiology. 2005-05-01; 55.Pt 3: 1021-6.
Genomic analysis of Hyphomonas neptunium contradicts 16S rRNA gene-based phylogenetic analysis: implications for the taxonomy of the orders 'Rhodobacterales' and Caulobacterales
Badger JH, Eisen JA, Ward NL
PMID: 15879228