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Publications

Journal of bacteriology. 2007-01-01; 189.1: 52-64.
Complete sequence analysis of novel plasmids from emetic and periodontal Bacillus cereus isolates reveals a common evolutionary history among the B. cereus-group plasmids, including Bacillus anthracis pXO1
Rasko DA, Rosovitz MJ, Økstad OA, Fouts DE, Jiang L, Cer RZ, Kolstø AB, Gill SR, Ravel J
PMID: 17041058
Studies in mycology. 2007-01-01; 59.11-7.
What can comparative genomics tell us about species concepts in the genus Aspergillus?
Rokas A, Payne G, Fedorova ND, Baker SE, Machida M, Yu J, Georgianna DR, Dean RA, Bhatnagar D, Cleveland TE, Wortman JR, Maiti R, Joardar V, Amedeo P, Denning DW, Nierman WC
PMID: 18490942
Genome biology. 2007-01-01; 8.3: R34.
Hawkeye: an interactive visual analytics tool for genome assemblies
Schatz MC, Phillippy AM, Shneiderman B, Salzberg SL
PMID: 17349036
BMC genomics. 2006-12-28; 7.327.
Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis
Campbell MA, Haas BJ, Hamilton JP, Mount SM, Buell CR
PMID: 17194304
Science (New York, N.Y.). 2006-12-22; 314.5807: 1892.
Ancient noncoding elements conserved in the human genome
Venkatesh B, Kirkness EF, Loh YH, Halpern AL, Lee AP, Johnson J, Dandona N, Viswanathan LD, Tay A, Venter JC, Strausberg RL, Brenner S
PMID: 17185593
Gene. 2006-12-15; 384.73-95.
Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information
Yan B, Núñez C, Ueki T, Esteve-Núñez A, Puljic M, Adkins RM, Methé BA, Lovley DR, Krushkal J
PMID: 17014972
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2006-12-01; 114.1: 31-9.
Comparative sequence and genetic analyses of asparagus BACs reveal no microsynteny with onion or rice
Jakse J, Telgmann A, Jung C, Khar A, Melgar S, Cheung F, Town CD, Havey MJ
PMID: 17016688
PLoS genetics. 2006-12-01; 2.12: e214.
Secrets of soil survival revealed by the genome sequence of Arthrobacter aurescens TC1
Mongodin EF, Shapir N, Daugherty SC, Deboy RT, Emerson JB, Shvartzbeyn A, Radune D, Vamathevan J, Riggs F, Grinberg V, Khouri H, Wackett LP, Nelson KE, Sadowsky MJ
PMID: 17194220
Microbiology (Reading, England). 2006-12-01; 152.Pt 12: 3733-49.
Comparative genomics of Neisseria meningitidis: core genome, islands of horizontal transfer and pathogen-specific genes
Dunning Hotopp JC, Grifantini R, Kumar N, Tzeng YL, Fouts D, Frigimelica E, Draghi M, Giuliani MM, Rappuoli R, Stephens DS, Grandi G, Tettelin H
PMID: 17159225
PLoS pathogens. 2006-12-01; 2.12: e125.
Stochastic processes are key determinants of short-term evolution in influenza a virus
Nelson MI, Simonsen L, Viboud C, Miller MA, Taylor J, George KS, Griesemer SB, Ghedin E, Ghedi E, Sengamalay NA, Spiro DJ, Volkov I, Grenfell BT, Lipman DJ, Taubenberger JK, Holmes EC
PMID: 17140286