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Publications

BMC genomics. 2010-09-13; 11.494.
Genomic encyclopedia of sugar utilization pathways in the Shewanella genus
Rodionov DA, Yang C, Li X, Rodionova IA, Wang Y, Obraztsova AY, Zagnitko OP, Overbeek R, Romine MF, Reed S, Fredrickson JK, Nealson KH, Osterman AL
PMID: 20836887
BMC bioinformatics. 2010-09-10; 11.457.
An algorithm for automated closure during assembly
Koren S, Miller JR, Walenz BP, Sutton G
PMID: 20831800
BMC genomics. 2010-09-07; 11.488.
Molecular analysis of the diversity of vaginal microbiota associated with bacterial vaginosis
Ling Z, Kong J, Liu F, Zhu H, Chen X, Wang Y, Li L, Nelson KE, Xia Y, Xiang C
PMID: 20819230
BMC bioinformatics. 2010-09-07; 11.451.
VIGOR, an annotation program for small viral genomes
Wang S, Sundaram JP, Spiro D
PMID: 20822531
Nature biotechnology. 2010-09-01; 28.9: 951-6.
Draft genome sequence of the oilseed species Ricinus communis
Chan AP, Crabtree J, Zhao Q, Lorenzi H, Orvis J, Puiu D, Melake-Berhan A, Jones KM, Redman J, Chen G, Cahoon EB, Gedil M, Stanke M, Haas BJ, Wortman JR, Fraser-Liggett CM, Ravel J, Rabinowicz PD
PMID: 20729833
Fungal genetics and biology : FG & B. 2010-09-01; 47.9: 736-41.
SMURF: Genomic mapping of fungal secondary metabolite clusters
Khaldi N, Seifuddin FT, Turner G, Haft D, Nierman WC, Wolfe KH, Fedorova ND
PMID: 20554054
Nature methods. 2010-09-01; 7.9: 667-8; author reply 668.
Exhaustive benchmarking of the yeast two-hybrid system
Chen YC, Rajagopala SV, Stellberger T, Uetz P
PMID: 20805792
PloS one. 2010-08-26; 5.8: e12411.
Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential
Yeoman CJ, Yildirim S, Thomas SM, Durkin AS, Torralba M, Sutton G, Buhay CJ, Ding Y, Dugan-Rocha SP, Muzny DM, Qin X, Gibbs RA, Leigh SR, Stumpf R, White BA, Highlander SK, Nelson KE, Wilson BA
PMID: 20865041
Genome biology. 2010-08-25; 11.8: R85.
Digital expression profiling of novel diatom transcripts provides insight into their biological functions
Maheswari U, Jabbari K, Petit JL, Porcel BM, Allen AE, Cadoret JP, De Martino A, Heijde M, Kaas R, La Roche J, Lopez PJ, Martin-Jézéquel V, Meichenin A, Mock T, Schnitzler Parker M, Vardi A, Armbrust EV, Weissenbach J, Katinka M, Bowler C
PMID: 20738856
Proceedings of the National Academy of Sciences of the United States of America. 2010-08-17; 107.33: 14679-84.
Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton
Cuvelier ML, Allen AE, Monier A, McCrow JP, Messié M, Tringe SG, Woyke T, Welsh RM, Ishoey T, Lee JH, Binder BJ, Dupont CL, Latasa M, Guigand C, Buck KR, Hilton J, Thiagarajan M, Caler E, Read B, Lasken RS, Chavez FP, Worden AZ
PMID: 20668244