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Publications

The ISME journal. 2011-08-01; 5.8: 1279-90.
Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat
Liu Z, Klatt CG, Wood JM, Rusch DB, Ludwig M, Wittekindt N, Tomsho LP, Schuster SC, Ward DM, Bryant DA
PMID: 21697962
Nucleic acids research. 2011-08-01; 39.14: 6056-68.
Distinct patterns of somatic alterations in a lymphoblastoid and a tumor genome derived from the same individual
Galante PA, Parmigiani RB, Zhao Q, Caballero OL, de Souza JE, Navarro FC, Gerber AL, Nicolás MF, Salim AC, Silva AP, Edsall L, Devalle S, Almeida LG, Ye Z, Kuan S, Pinheiro DG, Tojal I, Pedigoni RG, de Sousa RG, Oliveira TY, de Paula MG, Ohno-Machado L, Kirkness EF, Levy S, da Silva WA, Vasconcelos AT, Ren B, Zago MA, Strausberg RL, Simpson AJ, de Souza SJ, Camargo AA
PMID: 21493686
Journal of bacteriology. 2011-08-01; 193.16: 4025-6.
Draft genome sequence of Bacteroides vulgatus PC510, a strain isolated from human feces
Cuív PÓ, Klaassens ES, Durkin AS, Harkins DM, Foster L, McCorrison J, Torralba M, Nelson KE, Morrison M
PMID: 21622758
Journal of clinical microbiology. 2011-08-01; 49.8: 2818-26.
Extensive horizontal gene transfer in ureaplasmas from humans questions the utility of serotyping for diagnostic purposes
Xiao L, Paralanov V, Glass JI, Duffy LB, Robertson JA, Cassell GH, Chen Y, Waites KB
PMID: 21697330
Journal of bacteriology. 2011-08-01; 193.16: 4199-213.
Genome sequences of the biotechnologically important Bacillus megaterium strains QM B1551 and DSM319
Eppinger M, Bunk B, Johns MA, Edirisinghe JN, Kutumbaka KK, Koenig SS, Creasy HH, Rosovitz MJ, Riley DR, Daugherty S, Martin M, Elbourne LD, Paulsen I, Biedendieck R, Braun C, Grayburn S, Dhingra S, Lukyanchuk V, Ball B, Ul-Qamar R, Seibel J, Bremer E, Jahn D, Ravel J, Vary PS
PMID: 21705586
Proceedings of the National Academy of Sciences of the United States of America. 2011-07-26; 108.30: 12348-53.
Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil)
Miller W, Hayes VM, Ratan A, Petersen DC, Wittekindt NE, Miller J, Walenz B, Knight J, Qi J, Zhao F, Wang Q, Bedoya-Reina OC, Katiyar N, Tomsho LP, Kasson LM, Hardie RA, Woodbridge P, Tindall EA, Bertelsen MF, Dixon D, Pyecroft S, Helgen KM, Lesk AM, Pringle TH, Patterson N, Zhang Y, Kreiss A, Woods GM, Jones ME, Schuster SC
PMID: 21709235
Genomics. 2011-07-01; 98.1: 26-39.
Investigating the genome diversity of B. cereus and evolutionary aspects of B. anthracis emergence
Papazisi L, Rasko DA, Ratnayake S, Bock GR, Remortel BG, Appalla L, Liu J, Dracheva T, Braisted JC, Shallom S, Jarrahi B, Snesrud E, Ahn S, Sun Q, Rilstone J, Okstad OA, Kolstø AB, Fleischmann RD, Peterson SN
PMID: 21447378
Bioinformatics (Oxford, England). 2011-07-01; 27.13: 1869-70.
Sim4db and Leaff: utilities for fast batch spliced alignment and sequence indexing
Walenz B, Florea L
PMID: 21551146
Journal of computational biology : a journal of computational molecular cell biology. 2011-07-01; 18.7: 895-906.
Big cat phylogenies, consensus trees, and computational thinking
Sul SJ, Williams TL
PMID: 21563975
Applied and environmental microbiology. 2011-07-01; 77.13: 4579-88.
Bacterial subfamily of LuxR regulators that respond to plant compounds
Subramoni S, Gonzalez JF, Johnson A, Péchy-Tarr M, Rochat L, Paulsen I, Loper JE, Keel C, Venturi V
PMID: 21531826