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Publications

Viruses. 2012-11-19; 4.11: 3209-26.
Virus pathogen database and analysis resource (ViPR): a comprehensive bioinformatics database and analysis resource for the coronavirus research community
Pickett BE, Greer DS, Zhang Y, Stewart L, Zhou L, Sun G, Gu Z, Kumar S, Zaremba S, Larsen CN, Jen W, Klem EB, Scheuermann RH
PMID: 23202522
BMC genomics. 2012-11-09; 13.603.
Comparative genomic analysis and phylogenetic position of Theileria equi
Kappmeyer LS, Thiagarajan M, Herndon DR, Ramsay JD, Caler E, Djikeng A, Gillespie JJ, Lau AO, Roalson EH, Silva JC, Silva MG, Suarez CE, Ueti MW, Nene VM, Mealey RH, Knowles DP, Brayton KA
PMID: 23137308
PloS one. 2012-11-07; 7.11: e48289.
Next generation sequencing to define prokaryotic and fungal diversity in the bovine rumen
Fouts DE, Szpakowski S, Purushe J, Torralba M, Waterman RC, MacNeil MD, Alexander LJ, Nelson KE
PMID: 23144861
Virology journal. 2012-11-06; 9.261.
Automated degenerate PCR primer design for high-throughput sequencing improves efficiency of viral sequencing
Li K, Shrivastava S, Brownley A, Katzel D, Bera J, Nguyen AT, Thovarai V, Halpin R, Stockwell TB
PMID: 23131097
AMIA ... Annual Symposium proceedings. AMIA Symposium. 2012-11-03; 2012.779-88.
A machine learning approach for identifying anatomical locations of actionable findings in radiology reports
Roberts K, Rink B, Harabagiu SM, Scheuermann RH, Toomay S, Browning T, Bosler T, Peshock R
PMID: 23304352
Journal of bacteriology. 2012-11-01; 194.22: 6356-7.
Draft genome sequence determination for cystic fibrosis and chronic granulomatous disease Burkholderia multivorans isolates
Varga JJ, Losada L, Zelazny AM, Brinkac L, Harkins D, Radune D, Hostetler J, Sampaio EP, Ronning CM, Nierman WC, Greenberg DE, Holland SM, Goldberg JB
PMID: 23105085
The Journal of general virology. 2012-11-01; 93.Pt 11: 2387-2398.
Genomic analysis of 16 Colorado human NL63 coronaviruses identifies a new genotype, high sequence diversity in the N-terminal domain of the spike gene and evidence of recombination
Dominguez SR, Sims GE, Wentworth DE, Halpin RA, Robinson CC, Town CD, Holmes KV
PMID: 22837419
Influenza and other respiratory viruses. 2012-11-01; 6.6: 404-16.
Influenza research database: an integrated bioinformatics resource for influenza research and surveillance
Squires RB, Noronha J, Hunt V, García-Sastre A, Macken C, Baumgarth N, Suarez D, Pickett BE, Zhang Y, Larsen CN, Ramsey A, Zhou L, Zaremba S, Kumar S, Deitrich J, Klem E, Scheuermann RH
PMID: 22260278
Nucleic acids research. 2012-11-01; 40.20: 10375-83.
Sequence analysis of a complete 1.66 Mb Prochlorococcus marinus MED4 genome cloned in yeast
Tagwerker C, Dupont CL, Karas BJ, Ma L, Chuang RY, Benders GA, Ramon A, Novotny M, Montague MG, Venepally P, Brami D, Schwartz A, Andrews-Pfannkoch C, Gibson DG, Glass JI, Smith HO, Venter JC, Hutchison CA
PMID: 22941652
mBio. 2012-10-30; 3.6:
Back to the future for dermatophyte genomics
Rivera ZS, Losada L, Nierman WC
PMID: 23111872